Outputs¶
| ID | Label | Type | Format |
|---|---|---|---|
| predictions_file | predictions_file | File | TXT |
| html_summary | html_summary | File | HTML |
| html_output | html_output | File | HTML |
| vep_output | vep_output | File | TEXT, JSON, VCF, GVF |
| output_vcf_file | output_vcf_file | File | VCF |
| netmhcpan_outputs_xls | netmhcpan_outputs_xls | File array | XLS |
| netmhcpan_outputs_txt | netmhcpan_outputs_txt | File array | TXT |
| output_xls | output_xls | File | XLS |
| control_fasta | control_fasta | File | FASTA |
| tumor_fasta | tumor_fasta | File | FASTA |
Outputs Details¶
- predictions_file
- the output file from HLAminer
- html_summary
- The HTML output summary file from Variant Effect Predictor
- vep_output
- The VEP annotated output VCF file
- output_vcf_file
- Formatted VCF file as input to netmhcpan
- netmhcpan_outputs_xls
- netmhcpan outputs in XLS format
- netmhcpan_outputs_txt
- netmhcpan outputs in TXT format
- output_xls
- Intermediary file from protein translator
- control_fasta
- control file without the mutation (control Proteome)
- tumor_fasta
- Fasta file with the mutation (tumor proteome)